![jmol color scheme jmol color scheme](https://cbm.msoe.edu/markMyweb/jmolCreatorStonyBrook/images/contentImages/help1.jpg)
H Li Be B C N O F Ne Na Mg Al Si P S Cl Ar K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe Cs Ba L* Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn He 1 of 14 2/15/10 10:12 AMĢ Fr Ra A* Rf Db Sg Bh Hs Mt (L:) La Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu (A:) Ac Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr Default element colors, by atomic number: CPKnew scheme applies only to Rasmol v (or later) only differences with classic CPK are shown. Click on an element to move to the same information in the Atomic Numbers table below.
![jmol color scheme jmol color scheme](http://pocket.ekmd.huji.ac.il/images/jmol1_1opk.png)
Default element colors, by periodic table: Hover over any element to see more information. are rendered in the color of alpha carbons for proteins, phosphorus for nucleic acids. Backbone displays such as ribbons, cartoons, etc. Atoms ('CPK' colors, default element colors) Related commands: color cpk, set defaultcolors Jmol, set defaultcolors Rasmol Applies color to each atom of the object according to element, as shown in the tables below. Many of the following coloring patterns apply only to PDB and mmcif files for biomacromolecules. if the object is omitted, atoms is assumed Information on RasMol colors is included for those who are adapting RasMol and Chime-based materials for use in Jmol. can be atoms, bonds, backbone, cartoon, stars, rockets, ribbon, dots, label, echo, hbonds, ssbonds, axes, boundbox, measures, polyhedra, isosurface, pmesh, unitcell. (For the default colors and color values used in Jmol, see tables below.) is specified using pre-defined terms detailed on this page. It can also be a JavaScript color name, a RasMol color name, or a Jmol color name.
Jmol color scheme download#
![jmol color scheme jmol color scheme](https://cbm.msoe.edu/teachingResources/jmol/jmolTraining/assets/colorRGB.jpg)
Be sure that CA's are separated by a contant value, say 5 Angstroem. Create a pdb-file which contains CA positions only, whereas the numbers correspond to your wanted increments of colors.To show a vertical/horizontal color bar indiacting the b-factor variation, use the script pseudobar.pml on the structure pseudobar.pdb, or do the following: Spectrum b, blue_white_red, minimum=20, maximum=50 B-factor coloring can be done with the spectrum command.